Basic Information
VIS ID
TVIS44010439
Fusion event
HTLV-1-CTAGE3P integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2014
PubMed ID
24735963
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr13
Cytoband
q14.3
Reference genome
GRCh37/hg19
Start
52482049/51907913 (Hg38)
End
52482049/51907913 (Hg38)
Orient
+
Location type
Intronic
Target gene
CTAGE3P
Nearest miRNA
hsa-mir-15a/Upstream/355246; hsa-mir-1267/Downstream/902137;
Nearest TSS
ENST00000623511/Upstream/45932; ENST00000616513/Downstream/26608;
Nearest CpG islands
None/Target, chr13-CpG: 551/Upstream/103476, chr13-CpG: 118/Downstream/103265
Nearby gene
ATP7B(-24757) ;
Upstream sequence
ATATTTTTTAAATCAACTATAATTTATTCAATTAAGCATAAATTTACTTTCACATTTGTCTACAACCACAGTAAATACAGTTCTTGGAATAAGGACAAAG
Downstream sequence
ACTTTAGAATTTAAAACCTCACCACCTGCAAGATTACATATATAAAACTCCCACTACTGTTTAGATAATAGTGGATTAATCAAATTAAAATAGTTAACAC
Reference
Cook, L. B., et al. The role of HTLV-1 clonality, proviral structure, and genomic integration site in adult T-cell leukemia/lymphoma. Blood,2014, 123(25): 3925-3931.
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