Basic Information
VIS ID
TVIS44010476
Fusion event
HTLV-1-ULK4 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2014
PubMed ID
24735963
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr3
Cytoband
p22.1
Reference genome
GRCh37/hg19
Start
41545666/41504175 (Hg38)
End
41545666/41504175 (Hg38)
Orient
-
Location type
Intronic
Target gene
ULK4
Nearest miRNA
hsa-mir-12127/Upstream/2365909; hsa-let-7g/Downstream/2610037;
Nearest TSS
ENST00000440867/Upstream/226024; ENST00000418790/Downstream/350736;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/304035, chr3-CpG: 17/Downstream/386942
Upstream sequence
TTAAGACTGGAGTATTTAGTTGGTCAGGTAGAgaatgcttgtccctacacattggcatgactctcccttccttccttcacttctctgctcaaatatcaac
Downstream sequence
ataaaaagagaggacttccccaatcaccttgcttacaacaacactcatctcacatgtcctatctgctaactgtttgtgtcaacatctgacatacttttac
Reference
Cook, L. B., et al. The role of HTLV-1 clonality, proviral structure, and genomic integration site in adult T-cell leukemia/lymphoma. Blood,2014, 123(25): 3925-3931.
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