Basic Information
VIS ID
TVIS44010522
Fusion event
HTLV-1-chr9 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2014
PubMed ID
24735963
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr9
Cytoband
q21.13
Reference genome
GRCh37/hg19
Start
75050334/72435418 (Hg38)
End
75050334/72435418 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-101-2/Upstream/1625334; hsa-let-7a-1/Downstream/11534330;
Nearest TSS
ENST00000422679/Upstream/70183; ENST00000643676/Downstream/86190;
Nearest CpG islands
None/Target, chr9-CpG: 64/Upstream/69590, chr9-CpG: 43/Downstream/2061444
Nearby gene
ZFAND5(-70171) ;
Upstream sequence
atgaggtctgctactaagggctcatgggtttaggtcaagctcacctgataatctcccttgtgatgaactcaaagtcaactggttagcaatcttgattaca
Downstream sequence
ttgtaaaatccattttctagtaatgtaacataattacaagtataacagagaacagagatcatggggacatcttagaattctgccttccacaTTTAAAATA
Reference
Cook, L. B., et al. The role of HTLV-1 clonality, proviral structure, and genomic integration site in adult T-cell leukemia/lymphoma. Blood,2014, 123(25): 3925-3931.
Curate