Basic Information
VIS ID
TVIS44010573
Fusion event
HTLV-1-ADAMTS6 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2014
PubMed ID
24735963
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr5
Cytoband
q12.3
Reference genome
GRCh37/hg19
Start
64778376/65482549 (Hg38)
End
64778376/65482549 (Hg38)
Orient
+
Location type
Intronic
Target gene
ADAMTS6
miRNAs that regulate target gene
hsa-mir-148b-3p ; hsa-mir-221-3p
Nearest miRNA
hsa-mir-10397/Upstream/5778846; hsa-mir-103a-1/Downstream/6686918;
Nearest TSS
ENST00000502646/Upstream/629; ENST00000508982/Downstream/4499;
Nearest CpG islands
None/Target, chr5-CpG: 87/Upstream/379160, chr5-CpG: 43/Downstream/80399
Nearby gene
ADAMTS6(-672) ;
Upstream sequence
AAGTAAACTAAAGTAAACTAATACCAGCACATTTTCCATTTGATTATCGACTTCAGGTTATGTGGAGCTTTAAaagaagaagaagaagaaaaaaaaaaag
Downstream sequence
TAGGGGAGGAGGGAGCGGGGGAAGGAAGAGAGAAGCTTGCATTATTTCCAGATGAGGGTGAGACTGGATGGTGTTTTAAAGTGCAACCGGGAAAAGCCAC
Reference
Cook, L. B., et al. The role of HTLV-1 clonality, proviral structure, and genomic integration site in adult T-cell leukemia/lymphoma. Blood,2014, 123(25): 3925-3931.
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