Basic Information
VIS ID
TVIS44010611
Fusion event
HTLV-1-LOC339166 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2014
PubMed ID
24735963
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr17
Cytoband
p13.2
Reference genome
GRCh37/hg19
Start
5690370/5787050 (Hg38)
End
5690370/5787050 (Hg38)
Orient
+
Location type
ncRNA_intronic
Target gene
LOC339166
Nearest miRNA
hsa-mir-1253/Upstream/816900; hsa-mir-10226/Downstream/868390;
Nearest TSS
ENST00000595228/Upstream/14124; ENST00000572764/Downstream/270757;
Nearest CpG islands
None/Target, chr17-CpG: 26/Upstream/285768, chr17-CpG: 112/Downstream/282945
Upstream sequence
GGGAGCTGGGTCTCGATGCATGAGAGGCAGGATCAAACACTACAGTGTGTTTTGGGGAAAagtcagaaagtaggagtctctgtattgcttagttgtgtga
Downstream sequence
ccttgagcaattcttttccttttctgggaaattcggtttccctctctgtagagtggagtggttaagagtagtacaggctccttagattccatcttgctac
Reference
Cook, L. B., et al. The role of HTLV-1 clonality, proviral structure, and genomic integration site in adult T-cell leukemia/lymphoma. Blood,2014, 123(25): 3925-3931.
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