Basic Information
VIS ID
TVIS44010614
Fusion event
HTLV-1-LOC107986009 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2014
PubMed ID
24735963
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr3
Cytoband
p25.3
Reference genome
GRCh37/hg19
Start
8621319/8579633 (Hg38)
End
8621319/8579633 (Hg38)
Orient
-
Location type
Intronic
Target gene
LOC107986009
Nearest miRNA
hsa-mir-4790/Upstream/3329378; hsa-let-7g/Downstream/1700718;
Nearest TSS
ENST00000440867/Upstream/77745; ENST00000397368/Downstream/13491;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/77740, chr3-CpG: 184/Downstream/187642
Nearby gene
LINC00312(+4965) ;
Upstream sequence
aaaaagaagccctggccaagaaggcagaaagtctgagttcagatctgagctttaccacagagtggctctaaaccttcatgttcaactgtacaatgggact
Downstream sequence
atccgtcctatccgcctctcaggtagatgaaatggggtaggcaatacgaaagagctgtgtacattgtcaagagccctattcatatgtGGCCTGCTTAATG
Reference
Cook, L. B., et al. The role of HTLV-1 clonality, proviral structure, and genomic integration site in adult T-cell leukemia/lymphoma. Blood,2014, 123(25): 3925-3931.
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