VISDB Viral Integration Site DataBase

VIS ID

TVIS44010717

Fusion event

HTLV-1-KCNN3 integration

Validated

No

Detection method

HTS

Data source

download(RID)

Sample type

Disease

Adult T-cell leukemia (ATL)

Quality evaluation

Normal

Reported year

2014

PubMed ID

Virus name

HTLV-1

Reference genome

Not given

Chromosome

chr1

Cytoband

q21.3

Reference genome

Start

End

154810004/154837528 (Hg38)

Orient

-

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-889-3p ; hsa-mir-155-5p ; hsa-mir-3152-3p ; hsa-mir-6867-5p ; hsa-mir-3182 ; hsa-mir-1237-3p ; hsa-mir-92a-2-5p ; hsa-mir-2053 ; hsa-mir-6857-5p ; hsa-mir-4450 ; hsa-mir-8089 ; hsa-mir-4700-5p ; hsa-mir-4667-5p ; hsa-mir-6768-3p ; hsa-mir-4753-5p ; hsa-mir-1277-5p ; hsa-mir-3942-3p ; hsa-mir-5100 ; hsa-mir-190a-3p ; hsa-mir-892c-5p ; hsa-mir-5011-5p ; hsa-mir-5003-3p ; hsa-mir-335-3p ; hsa-mir-30e-3p ; hsa-mir-30d-3p ; hsa-mir-30a-3p ; hsa-mir-511-5p ; hsa-mir-6830-3p ; hsa-mir-29a-5p ; hsa-mir-3920 ; hsa-mir-622 ; hsa-mir-4444 ; hsa-mir-4711-3p ; hsa-mir-4724-3p ; hsa-mir-501-5p ; hsa-mir-6782-3p ; hsa-mir-500b-5p ; hsa-mir-362-5p ; hsa-mir-2681-5p ; hsa-mir-421 ; hsa-mir-1245b-3p ; hsa-mir-3620-3p ; hsa-mir-6865-3p ; hsa-mir-4709-5p ; hsa-mir-3613-3p ; hsa-mir-548p ; hsa-mir-181c-3p ; hsa-mir-5683 ; hsa-mir-548c-3p ; hsa-mir-203b-3p ; hsa-mir-7158-3p ; hsa-mir-378a-5p ; hsa-mir-7111-3p ; hsa-mir-6131 ; hsa-mir-6821-3p ; hsa-mir-6790-3p ; hsa-mir-4680-5p ; hsa-mir-4635 ; hsa-mir-3663-5p ; hsa-mir-3653-5p ; hsa-mir-6769b-3p ; hsa-mir-4723-3p ; hsa-mir-3183 ; hsa-mir-3934-5p ; hsa-mir-764 ; hsa-mir-125a-3p ; hsa-mir-1273a ; hsa-mir-1273g-3p ; hsa-mir-3672 ; hsa-mir-4486 ; hsa-mir-4649-5p ; hsa-mir-4793-3p ; hsa-mir-4797-5p ; hsa-mir-508-5p ; hsa-mir-5586-3p ; hsa-mir-661 ; hsa-mir-6729-5p ; hsa-mir-6864-3p ; hsa-mir-759 ; hsa-mir-7703 ; hsa-mir-873-3p ; hsa-mir-939-3p

Nearest miRNA

hsa-mir-101-1/Upstream/643785; hsa-mir-1182/Downstream/138165;

Nearest TSS

Nearest CpG islands

None/Target, chr1-CpG: 111/Upstream/65140, chr1-CpG: 79/Downstream/98958

Upstream sequence

caccgcgcccagccTATCTACATGTAACAGCTGTGATCAAAGACCTAGGAAAACAGCCAACCCAGCCAACTCCTCCTCCTGGTTCCTCACCCTGGAGGAG

Downstream sequence

CTCTGGGCCCGAGAGCACAGAAGCTAGGAAGGCAGCAGAACGAGTGATGCTTATGGGGGAAAACCTGGCTTTCCACCCACAGCTGTTTCAAGGCGTCCTG