VISDB Viral Integration Site DataBase

VIS ID

TVIS44010792

Fusion event

HTLV-1-ALDH9A1 integration

Validated

No

Detection method

HTS

Data source

download(RID)

Sample type

Disease

Adult T-cell leukemia (ATL)

Quality evaluation

Normal

Reported year

2014

PubMed ID

Virus name

HTLV-1

Reference genome

Not given

Chromosome

chr1

Cytoband

q24.1

Reference genome

Start

End

165663953/165694716 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-124-3p ; hsa-mir-155-5p ; hsa-mir-215-5p ; hsa-mir-34a-5p ; hsa-mir-192-5p ; hsa-mir-27a-3p ; hsa-mir-497-5p ; hsa-mir-128-3p ; hsa-mir-100-5p ; hsa-mir-92a-3p ; hsa-mir-802 ; hsa-mir-1250-3p ; hsa-mir-20a-5p ; hsa-mir-106b-5p ; hsa-mir-8070 ; hsa-mir-494-5p ; hsa-mir-410-5p ; hsa-mir-323b-5p ; hsa-mir-1283 ; hsa-mir-4275 ; hsa-mir-1255b-2-3p ; hsa-mir-582-3p ; hsa-mir-30e-3p ; hsa-mir-30d-3p ; hsa-mir-4276 ; hsa-mir-30a-3p ; hsa-mir-5192 ; hsa-mir-4644 ; hsa-mir-4306 ; hsa-mir-185-5p ; hsa-mir-8075 ; hsa-mir-8082 ; hsa-mir-3134 ; hsa-mir-4534 ; hsa-mir-3928-3p ; hsa-mir-5190 ; hsa-mir-561-5p ; hsa-mir-3162-5p ; hsa-mir-4703-3p ; hsa-mir-711 ; hsa-mir-20b-3p ; hsa-mir-6830-5p ; hsa-mir-135a-3p ; hsa-mir-5000-5p ; hsa-mir-4756-5p ; hsa-mir-4739 ; hsa-mir-6760-5p ; hsa-mir-1321 ; hsa-mir-4690-5p ; hsa-mir-6816-3p ; hsa-mir-4662a-3p ; hsa-mir-4325 ; hsa-mir-4793-3p ; hsa-mir-1273g-3p ; hsa-mir-3614-5p ; hsa-mir-890 ; hsa-mir-181d-5p ; hsa-mir-181c-5p ; hsa-mir-181b-5p ; hsa-mir-519d-3p ; hsa-mir-181a-5p ; hsa-mir-93-5p ; hsa-mir-20b-5p ; hsa-mir-17-5p ; hsa-mir-1252-5p ; hsa-mir-194-3p ; hsa-mir-4434 ; hsa-mir-4516 ; hsa-mir-4519 ; hsa-mir-4531 ; hsa-mir-5703 ; hsa-mir-6716-5p ; hsa-mir-6770-5p ; hsa-mir-8060

Nearest miRNA

hsa-mir-101-1/Upstream/3352076; hsa-mir-1182/Downstream/213205;

Nearest TSS

Nearest CpG islands

None/Target, chr1-CpG: 111/Upstream/63379, chr1-CpG: 36/Downstream/3591

Upstream sequence

CATCAAAATAAAGAATAAAAAGGAAACAAGTAAACCACATGGTTTAAAAAGAAAGAAAggctgggcacagtggctcacgcctgtaatcccagcattttgt

Downstream sequence

gaggccgatgtgggtggatcacttgaggtcaggagttcaagaccagcctggccaacatggtgaaatccatctctacgaaaaatacaaaaattagccaggc