Basic Information
VIS ID
TVIS44011033
Fusion event
HTLV-1-chr15 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2014
PubMed ID
24735963
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr15
Cytoband
q24.2
Reference genome
GRCh37/hg19
Start
75475722/75183381 (Hg38)
End
75475722/75183381 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-10393/Upstream/342674; hsa-mir-11181/Downstream/170230;
Nearest TSS
ENST00000557528/Upstream/133699; ENST00000563905/Downstream/12262;
Nearest CpG islands
None/Target, chr15-CpG: 55/Upstream/4517, chr15-CpG: 146/Downstream/18260
Nearby gene
C15orf39(No orient, 18499)
Upstream sequence
cagatacataggttttctttttctttttttcattgcactcaggctggagtgcaatgccatgatcttggctcactgcaacctccgcctcctgggttccaga
Downstream sequence
gattctcccgcctcagcctcctgagtagttgggattacaggcacctgccaccacacccagctaatttttgtatttttagtagagagggggtttcaccatg
Reference
Cook, L. B., et al. The role of HTLV-1 clonality, proviral structure, and genomic integration site in adult T-cell leukemia/lymphoma. Blood,2014, 123(25): 3925-3931.
Curate