VISDB Viral Integration Site DataBase

VIS ID

TVIS44011064

Fusion event

HTLV-1-NUDT7 integration

Validated

No

Detection method

HTS

Data source

download(RID)

Sample type

Disease

Adult T-cell leukemia (ATL)

Quality evaluation

Normal

Reported year

2014

PubMed ID

Virus name

HTLV-1

Reference genome

Not given

Chromosome

chr16

Cytoband

q23.1

Reference genome

Start

End

77765127/77731230 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-6513-5p ; hsa-mir-887-5p ; hsa-mir-3913-5p ; hsa-mir-3122 ; hsa-mir-450a-1-3p ; hsa-mir-6780a-5p ; hsa-mir-6779-5p ; hsa-mir-3689c ; hsa-mir-3689b-3p ; hsa-mir-3689a-3p ; hsa-mir-30b-3p ; hsa-mir-1273h-5p ; hsa-mir-6788-5p ; hsa-mir-30c-2-3p ; hsa-mir-30c-1-3p ; hsa-mir-6514-3p ; hsa-mir-24-3p ; hsa-mir-4284 ; hsa-mir-6847-3p ; hsa-mir-6811-3p ; hsa-mir-214-5p ; hsa-mir-548s ; hsa-mir-3926 ; hsa-mir-4470 ; hsa-mir-4786-5p ; hsa-mir-3190-5p ; hsa-mir-6849-3p ; hsa-mir-942-3p ; hsa-mir-1273d ; hsa-mir-548as-3p ; hsa-mir-548z ; hsa-mir-548h-3p ; hsa-mir-548d-3p ; hsa-mir-548bb-3p ; hsa-mir-548ac ; hsa-mir-5006-3p ; hsa-mir-4755-5p ; hsa-mir-7641 ; hsa-mir-211-5p ; hsa-mir-204-5p ; hsa-mir-623 ; hsa-mir-6780b-3p ; hsa-mir-4780 ; hsa-mir-3938 ; hsa-mir-4748 ; hsa-mir-4464 ; hsa-mir-4762-3p ; hsa-mir-3192-3p ; hsa-mir-3171 ; hsa-mir-194-5p ; hsa-mir-4502 ; hsa-mir-627-3p ; hsa-mir-411-3p ; hsa-mir-379-3p ; hsa-mir-590-3p ; hsa-mir-1827 ; hsa-mir-4649-3p ; hsa-mir-4722-5p ; hsa-mir-4768-3p ; hsa-mir-4804-3p ; hsa-mir-6808-5p ; hsa-mir-6893-5p ; hsa-mir-7162-3p ; hsa-mir-940

Nearest miRNA

hsa-mir-1225/Upstream/862211; hsa-mir-11401/Downstream/3653788;

Nearest TSS

Nearest CpG islands

None/Target, chr16-CpG: 29/Upstream/8446, chr16-CpG: 65/Downstream/57248

Upstream sequence

tcatattttaaaaatcattgcccagctcaaGGATAACATTTTCTTGAGAGCAATGTTCTCACTAATCCAAAATGATCTTTTCCAATTCCTATTACCTATT

Downstream sequence

AATTGGAATAGGTGTACAAGGCAAATTGAATAAAATTGGTATGCTATGAGATACTTTTGAAACCTTTCAAAATAcagtcatgtgctgcaaaactgttttt