Basic Information
VIS ID
TVIS44011131
Fusion event
HTLV-1-chr19 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2014
PubMed ID
24735963
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr19
Cytoband
q13.41
Reference genome
GRCh37/hg19
Start
53404389/52901136 (Hg38)
End
53404389/52901136 (Hg38)
Orient
-
Location type
Intergenic
Fragile sites / regions
FRA19A
Nearest miRNA
hsa-let-7e/Upstream/619243; hsa-mir-10394/Downstream/765543;
Nearest TSS
ENST00000633603/Upstream/3443; ENST00000594546/Downstream/22246;
Nearest CpG islands
None/Target, chr19-CpG: 112/Upstream/3184, chr19-CpG: 23/Downstream/21689
Nearby gene
ZNF888(-4757) ;
Upstream sequence
tgttctagctattattttacttgtgtcacttagaaaaagactagtctttaattttattttaaaaactgtaatcatgggaggcttaaaatgggttataaca
Downstream sequence
cacatcaggttggttattccttgggctacatactttggatagaatagcattatacaaacaaatttcttttagaatcctggtacacttataataactataa
Reference
Cook, L. B., et al. The role of HTLV-1 clonality, proviral structure, and genomic integration site in adult T-cell leukemia/lymphoma. Blood,2014, 123(25): 3925-3931.
Curate