VISDB Viral Integration Site DataBase

VIS ID

TVIS44011167

Fusion event

HTLV-1-PSD4 integration

Validated

No

Detection method

HTS

Data source

download(RID)

Sample type

Disease

Adult T-cell leukemia (ATL)

Quality evaluation

Normal

Reported year

2014

PubMed ID

Virus name

HTLV-1

Reference genome

Not given

Chromosome

chr2

Cytoband

q14.1

Reference genome

Start

End

113922874/113165297 (Hg38)

Orient

-

Location type

Intronic

Fragile sites / regions

FRA2S ; FRA2B

Target gene

miRNAs that regulate target gene

hsa-mir-124-3p ; hsa-mir-4533 ; hsa-mir-665 ; hsa-mir-1273e ; hsa-mir-3915 ; hsa-mir-650 ; hsa-mir-3612 ; hsa-mir-7160-5p ; hsa-mir-6884-5p ; hsa-mir-485-5p ; hsa-mir-3928-3p ; hsa-mir-219b-3p ; hsa-mir-1247-3p ; hsa-mir-4478 ; hsa-mir-3929 ; hsa-mir-4419b ; hsa-mir-6511a-5p ; hsa-mir-1910-3p ; hsa-mir-302f ; hsa-mir-4428 ; hsa-mir-4783-5p ; hsa-mir-6807-5p ; hsa-mir-7151-3p ; hsa-mir-5095 ; hsa-mir-1292-3p ; hsa-mir-4267 ; hsa-mir-4438 ; hsa-mir-6842-3p ; hsa-mir-647 ; hsa-mir-513b-5p ; hsa-mir-6762-3p ; hsa-mir-604 ; hsa-mir-6845-3p ; hsa-mir-6777-3p ; hsa-mir-4639-3p ; hsa-mir-4719 ; hsa-mir-8485 ; hsa-mir-6719-3p ; hsa-mir-641 ; hsa-mir-3617-5p ; hsa-mir-6771-5p ; hsa-mir-4722-5p ; hsa-mir-4680-5p ; hsa-mir-6746-5p ; hsa-mir-4768-3p ; hsa-mir-6516-5p ; hsa-mir-455-3p ; hsa-mir-6499-3p ; hsa-mir-2467-3p ; hsa-mir-6086 ; hsa-mir-377-5p ; hsa-mir-1827 ; hsa-mir-219a-2-3p ; hsa-mir-4257 ; hsa-mir-4461 ; hsa-mir-10a-5p ; hsa-mir-10b-5p ; hsa-mir-146a-3p ; hsa-mir-339-5p ; hsa-mir-3675-3p ; hsa-mir-4293 ; hsa-mir-4421 ; hsa-mir-4662a-5p ; hsa-mir-4684-5p ; hsa-mir-4766-5p ; hsa-mir-4786-5p ; hsa-mir-5699-3p ; hsa-mir-593-3p ; hsa-mir-6732-3p ; hsa-mir-6771-3p ; hsa-mir-6818-3p ; hsa-mir-6849-3p ; hsa-mir-6895-3p

Nearest miRNA

hsa-mir-1285-2/Upstream/1394163; hsa-mir-10b/Downstream/417662;

Nearest TSS

Nearest CpG islands

None/Target, chr2-CpG: 135/Upstream/7478, chr2-CpG: 83/Downstream/33469

Nearby gene

PSD4(+8686) ;

Upstream sequence

CGAGTGGACTCTGCCTTTCTGGAGCTCTCAGTGCGGCCTTGGAAGATGCATAGATGTATTGAGTCAGAGAGGAGGGAAATGGCCCCAGGAAGCTTAGGTG

Downstream sequence

TGCGGGCTCTCCTCCTGGGGTATGAGCTCCGAGGCCCCAGCGCTCTTCCTGCTAGGAGCTGCCAAACCAGCCGTCCCTTTTGTCTTCTGAAGATGACAAT