VISDB Viral Integration Site DataBase

VIS ID

TVIS44011297

Fusion event

HTLV-1-SSR3 integration

Validated

No

Detection method

HTS

Data source

download(RID)

Sample type

Disease

Adult T-cell leukemia (ATL)

Quality evaluation

Normal

Reported year

2014

PubMed ID

Virus name

HTLV-1

Reference genome

Not given

Chromosome

chr3

Cytoband

q25.31

Reference genome

Start

End

156263031/156545242 (Hg38)

Orient

-

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-148b-3p ; hsa-mir-132-3p ; hsa-mir-122-5p ; hsa-mir-615-3p ; hsa-mir-125b-5p ; hsa-mir-3177-3p ; hsa-mir-335-3p ; hsa-mir-498 ; hsa-mir-4465 ; hsa-mir-26b-5p ; hsa-mir-26a-5p ; hsa-mir-1297 ; hsa-mir-4744 ; hsa-mir-186-3p ; hsa-mir-583 ; hsa-mir-1276 ; hsa-mir-4311 ; hsa-mir-1305 ; hsa-mir-6809-3p ; hsa-mir-6833-3p ; hsa-mir-4768-5p ; hsa-mir-3692-3p ; hsa-mir-4753-3p ; hsa-mir-6881-3p ; hsa-mir-6780a-3p ; hsa-mir-7111-3p ; hsa-mir-6515-3p ; hsa-mir-1236-3p ; hsa-mir-125b-2-3p ; hsa-mir-4259 ; hsa-mir-4715-5p ; hsa-mir-6513-5p ; hsa-mir-887-5p ; hsa-mir-3913-5p ; hsa-mir-3122 ; hsa-mir-450a-1-3p ; hsa-mir-6780a-5p ; hsa-mir-6779-5p ; hsa-mir-3689c ; hsa-mir-3689b-3p ; hsa-mir-3689a-3p ; hsa-mir-30b-3p ; hsa-mir-1273h-5p ; hsa-mir-6788-5p ; hsa-mir-30c-2-3p ; hsa-mir-30c-1-3p ; hsa-mir-6720-5p ; hsa-mir-6512-3p ; hsa-mir-3178 ; hsa-mir-6799-5p ; hsa-mir-6883-5p ; hsa-mir-6785-5p ; hsa-mir-4728-5p ; hsa-mir-149-3p ; hsa-mir-7106-5p ; hsa-mir-24-3p ; hsa-mir-4284 ; hsa-mir-6499-5p ; hsa-mir-338-3p ; hsa-mir-4530 ; hsa-mir-383-3p

Nearest miRNA

hsa-let-7g/Upstream/4979247; hsa-mir-1224/Downstream/2737404;

Nearest TSS

Nearest CpG islands

None/Target, chr3-CpG: 148/Upstream/253711, chr3-CpG: 49/Downstream/9605

Upstream sequence

GTTGGTTAATTAACTTTGTAAAGCAgtttttaaaagggtaggttgtgacccattagtgggatgtgaactcaatcaagtggatcgaatgcccatagaaatt

Downstream sequence

aattgagttgagaccagcattttaaaaaaatgaaataggaaagaatagaaaaacatcagcagcacatcgcacagagtaggataattatcgttttatgaaa