Basic Information
VIS ID
TVIS44011299
Fusion event
HTLV-1-chr3 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2014
PubMed ID
24735963
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr3
Cytoband
q26.1
Reference genome
GRCh37/hg19
Start
166753163/167035375 (Hg38)
End
166753163/167035375 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-let-7g/Upstream/2863819; hsa-mir-1224/Downstream/1516479;
Nearest TSS
ENST00000440867/Upstream/190419; ENST00000498413/Downstream/246946;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/3030868, chr3-CpG: 23/Downstream/344764
Nearby gene
ZBBX(-204914) ;
Upstream sequence
tttgggtatatacctagtaacggggttgctgggtcaaatggtatttctgtcttttggtgtttgaggaatcgcaacactgtcttccacaatggttgaacta
Downstream sequence
atttacactcccaccagcagtgtagaagtgttctttatgctccacaaccttgccagtgtctgttattttattgactttttaataatagccattctgacta
Reference
Cook, L. B., et al. The role of HTLV-1 clonality, proviral structure, and genomic integration site in adult T-cell leukemia/lymphoma. Blood,2014, 123(25): 3925-3931.
Curate