Basic Information
VIS ID
TVIS44011323
Fusion event
HTLV-1-LOC101928893 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2014
PubMed ID
24735963
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr4
Cytoband
q21.21
Reference genome
GRCh37/hg19
Start
79639821/78718667 (Hg38)
End
79639821/78718667 (Hg38)
Orient
+
Location type
Intronic
Target gene
LOC101928893
Nearest miRNA
hsa-mir-12113/Upstream/2143041; hsa-mir-1243/Downstream/4034670;
Nearest TSS
ENST00000502981/Upstream/72450; ENST00000515075/Downstream/57306;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/166644, chr4-CpG: 108/Downstream/56886
Nearby gene
LINC01094(No orient, 34166)
Upstream sequence
gagataagaggtcggggcacagaaataagggattggggcacagagatataagaggttggggcacggaaataagggattggggtgcagagatatgaggttg
Downstream sequence
gggtacttgcccctcttctagaaaagcgggacttgccgctaagaatgaaggagaaggggttgaggggtacttgcccctcccccagaaaagcagagaaggg
Reference
Cook, L. B., et al. The role of HTLV-1 clonality, proviral structure, and genomic integration site in adult T-cell leukemia/lymphoma. Blood,2014, 123(25): 3925-3931.
Curate