Basic Information
VIS ID
TVIS44011345
Fusion event
HTLV-1-chr4 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2014
PubMed ID
24735963
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr4
Cytoband
q31.21
Reference genome
GRCh37/hg19
Start
146223653/145302501 (Hg38)
End
146223653/145302501 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-12113/Upstream/1958966; hsa-mir-1305/Downstream/1106082;
Nearest TSS
ENST00000502981/Upstream/122340; ENST00000514168/Downstream/37920;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/121598, chr4-CpG: 155/Downstream/178886
Nearby gene
OTUD4(-122821) ;
Upstream sequence
ccaccagacctgtgtttatttccatctccacagtgtatgtagctccttgaatatgactgtaggttactttgtagaggcactaaggaaatctttacaacat
Downstream sequence
acacttgccatggtattgcaaggtctttctttctagggacccagacacttctttagtcaatgggttctggatctgaaaattggctcagggacaggaactg
Reference
Cook, L. B., et al. The role of HTLV-1 clonality, proviral structure, and genomic integration site in adult T-cell leukemia/lymphoma. Blood,2014, 123(25): 3925-3931.
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