Basic Information
VIS ID
TVIS44011379
Fusion event
HTLV-1-IPO11-LRRC70 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2014
PubMed ID
24735963
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr5
Cytoband
q12.1
Reference genome
GRCh37/hg19
Start
61901217/62605390 (Hg38)
End
61901217/62605390 (Hg38)
Orient
-
Location type
ncRNA_intronic
Fragile sites / regions
FRA5H
Target gene
IPO11-LRRC70
Nearest miRNA
hsa-mir-10397/Upstream/2901687; hsa-mir-103a-1/Downstream/9564077;
Nearest TSS
ENST00000502646/Upstream/4161; ENST00000504296/Downstream/1356743;
Nearest CpG islands
None/Target, chr5-CpG: 87/Upstream/192161, chr5-CpG: 32/Downstream/1353827
Upstream sequence
GATTAATATTATATCAAATGTGCCAAATAATTTTCCATACGTTTCTGAGAATTCTCTATATTTTATTTCAAATAAGGATGAAATTTACACTCAGGAAAGC
Downstream sequence
TATTAAGCTGTCCAGCCTTTTGATCTCCCTTTTCATTCAGCCTCTCTCTCTACCTTTCATTTCGGTGAAATAATACTTAGAATAGCACATGCAGCTCAAG
Reference
Cook, L. B., et al. The role of HTLV-1 clonality, proviral structure, and genomic integration site in adult T-cell leukemia/lymphoma. Blood,2014, 123(25): 3925-3931.
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