VISDB Viral Integration Site DataBase

VIS ID

TVIS44011399

Fusion event

HTLV-1-ARL10 integration

Validated

No

Detection method

HTS

Data source

download(RID)

Sample type

Disease

Adult T-cell leukemia (ATL)

Quality evaluation

Normal

Reported year

2014

PubMed ID

Virus name

HTLV-1

Reference genome

Not given

Chromosome

chr5

Cytoband

q35.2

Reference genome

Start

End

175817941/176390940 (Hg38)

Orient

+

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-155-5p ; hsa-mir-142-3p ; hsa-mir-128-3p ; hsa-mir-16-5p ; hsa-mir-7641 ; hsa-mir-5189-3p ; hsa-mir-4695-3p ; hsa-mir-3185 ; hsa-mir-3921 ; hsa-mir-4653-5p ; hsa-mir-301b-5p ; hsa-mir-301a-5p ; hsa-mir-146a-3p ; hsa-mir-7978 ; hsa-mir-3973 ; hsa-mir-4661-3p ; hsa-mir-582-3p ; hsa-mir-5688 ; hsa-mir-495-3p ; hsa-mir-548l ; hsa-let-7g-3p ; hsa-let-7a-2-3p ; hsa-mir-6739-5p ; hsa-mir-3153 ; hsa-mir-6733-5p ; hsa-mir-6770-5p ; hsa-mir-7515 ; hsa-mir-5584-5p ; hsa-mir-3154 ; hsa-mir-552-3p ; hsa-mir-320e ; hsa-mir-4429 ; hsa-mir-320d ; hsa-mir-320c ; hsa-mir-320b ; hsa-mir-320a ; hsa-mir-1305 ; hsa-mir-4275 ; hsa-mir-192-3p ; hsa-mir-3688-3p ; hsa-mir-8076 ; hsa-mir-5583-3p ; hsa-mir-520e ; hsa-mir-520d-3p ; hsa-mir-520c-3p ; hsa-mir-520b ; hsa-mir-520a-3p ; hsa-mir-373-3p ; hsa-mir-372-3p ; hsa-mir-302e ; hsa-mir-302d-3p ; hsa-mir-302c-3p ; hsa-mir-302b-3p ; hsa-mir-302a-3p ; hsa-mir-519c-3p ; hsa-mir-519b-3p ; hsa-mir-519a-3p ; hsa-mir-649 ; hsa-mir-548z ; hsa-mir-548h-3p ; hsa-mir-548d-3p ; hsa-mir-548bb-3p ; hsa-mir-548ac ; hsa-mir-6836-3p ; hsa-mir-5001-3p ; hsa-mir-4279 ; hsa-mir-6783-3p ; hsa-mir-1343-3p ; hsa-mir-23b-5p ; hsa-mir-23a-5p ; hsa-mir-4284 ; hsa-mir-3194-3p ; hsa-mir-6829-3p ; hsa-mir-6791-3p ; hsa-mir-6778-3p ; hsa-mir-2276-3p ; hsa-mir-4638-5p ; hsa-mir-1976 ; hsa-mir-3653-5p ; hsa-mir-1304-3p ; hsa-mir-6741-3p ; hsa-mir-6742-3p ; hsa-mir-6852-5p ; hsa-mir-939-3p ; hsa-mir-6747-3p ; hsa-mir-6727-3p ; hsa-mir-4722-3p ; hsa-mir-660-3p ; hsa-mir-6890-3p ; hsa-mir-122-3p ; hsa-mir-6796-3p ; hsa-mir-665 ; hsa-mir-6780a-5p ; hsa-mir-6779-5p ; hsa-mir-3689c ; hsa-mir-3689b-3p ; hsa-mir-3689a-3p ; hsa-mir-30b-3p ; hsa-mir-1273h-5p ; hsa-mir-6788-5p ; hsa-mir-30c-2-3p ; hsa-mir-30c-1-3p ; hsa-mir-526b-5p ; hsa-mir-6799-5p ; hsa-mir-6883-5p ; hsa-mir-6785-5p ; hsa-mir-4728-5p ; hsa-mir-149-3p ; hsa-mir-7106-5p ; hsa-mir-7160-5p ; hsa-mir-873-5p ; hsa-mir-6884-5p ; hsa-mir-485-5p ; hsa-mir-4649-3p ; hsa-mir-940 ; hsa-mir-6893-5p ; hsa-mir-6808-5p ; hsa-mir-3156-5p ; hsa-mir-1273a ; hsa-mir-1273c ; hsa-mir-1273g-3p ; hsa-mir-4252 ; hsa-mir-4486 ; hsa-mir-4649-5p ; hsa-mir-4793-3p ; hsa-mir-508-5p ; hsa-mir-6729-5p ; hsa-mir-7-1-3p ; hsa-mir-7-2-3p ; hsa-mir-766-3p ; hsa-mir-7703

Nearest miRNA

hsa-mir-10397/Upstream/22909; hsa-mir-1229/Downstream/238499;

Nearest TSS

Nearest CpG islands

None/Target, chr5-CpG: 87/Upstream/1493, chr5-CpG: 91/Downstream/25177

Nearby gene

HIGD2A(+1190) ;

Upstream sequence

GAGATTTGTGTACATAGTGTTTGAGGGTTCTGGAAGAGGAGGCTGAGGACCTGAGCACACTCTAGAAGAGAGGTGACCTGTTAGTTCCTCCTTCATGTAG

Downstream sequence

TTTCAAACAAGTATTCCTGGTCTGTGGTCAGCGCTCCTCAAATGTTGGATTTGAGGACCTGCGCTCTTCCCGAGTGATTGTACTGTTTTCAACACCAGCT