Basic Information
VIS ID
TVIS44011439
Fusion event
HTLV-1-LOC105377899 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2014
PubMed ID
24735963
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr6
Cytoband
q16.1
Reference genome
GRCh37/hg19
Start
94349885/93640167 (Hg38)
End
94349885/93640167 (Hg38)
Orient
+
Location type
Intronic
Target gene
LOC105377899
Nearest miRNA
hsa-mir-10398/Upstream/2118430; hsa-mir-1202/Downstream/4384364;
Nearest TSS
ENST00000381078/Upstream/220620; ENST00000424678/Downstream/246733;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/220208, chr6-CpG: 69/Downstream/1937198
Nearby gene
TSG1(+66916) ;
Upstream sequence
tttgtctagtctaaagtgtattcaaagattgtttcagaataaataaatggagaaagaaatgttatagataaaaataaatggatataaaaagttagaaaga
Downstream sequence
ggaagcagtgcaaaaaagaatcttatctggttaaactgattaaagctacatgaatttattataagttttaaaaagtgaaccttaatagaaaaagtacatt
Reference
Cook, L. B., et al. The role of HTLV-1 clonality, proviral structure, and genomic integration site in adult T-cell leukemia/lymphoma. Blood,2014, 123(25): 3925-3931.
Curate