Basic Information
VIS ID
TVIS44011445
Fusion event
HTLV-1-ECT2L integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2014
PubMed ID
24735963
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr6
Cytoband
q24.1
Reference genome
GRCh37/hg19
Start
139212253/138891116 (Hg38)
End
139212253/138891116 (Hg38)
Orient
+
Location type
Intronic
Target gene
ECT2L
Nearest miRNA
hsa-mir-10398/Upstream/455822; hsa-mir-1202/Downstream/1314136;
Nearest TSS
ENST00000381078/Upstream/41738; ENST00000461027/Downstream/17621;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/94784, chr6-CpG: 110/Downstream/96245
Upstream sequence
aggggattccaaagtaaacctgaaaaatgagttcaggccatgataggaaggggggattggatatgcctcattatactctcctcccttaagaattcaggca
Downstream sequence
caactgaccaaaattaacattgaaacagagatcttaagactgataaaatgaactccttgtagaagtaagataccaaattctaacccaactctagtatagt
Reference
Cook, L. B., et al. The role of HTLV-1 clonality, proviral structure, and genomic integration site in adult T-cell leukemia/lymphoma. Blood,2014, 123(25): 3925-3931.
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