Basic Information
VIS ID
TVIS44011539
Fusion event
HTLV-1-WDYHV1 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2014
PubMed ID
24735963
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr8
Cytoband
q24.13
Reference genome
GRCh37/hg19
Start
124476728/123464488 (Hg38)
End
124476728/123464488 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
FRA8C ; FRA8E
Target gene
WDYHV1
miRNAs that regulate target gene
hsa-mir-193b-3p ; hsa-mir-192-3p ; hsa-mir-380-3p ; hsa-mir-365b-3p ; hsa-mir-365a-3p
Nearest miRNA
hsa-mir-12123/Upstream/116358; hsa-mir-10400/Downstream/1044027;
Nearest TSS
ENST00000518652/Upstream/34493; ENST00000518633/Downstream/42137;
Nearest CpG islands
None/Target, chr8-CpG: 109/Upstream/47303, chr8-CpG: 145/Downstream/75811
Nearby gene
WDYHV1(+22248) ;
Upstream sequence
CAGGGAAATGCTCGTGAACATGTTGCCTAACCCTGGATGCCCTCAGACTGAATACACGAGAGGTCAGAGTGGCAGCGGCATGAGGAGGAGGAAGGGTAGA
Downstream sequence
GAGACGCCACtggagagagcattgccaggctgtgcctccactctccctccccaggggtaagggccaggagtgctaccaccttcacctcaagggtacgatg
Reference
Cook, L. B., et al. The role of HTLV-1 clonality, proviral structure, and genomic integration site in adult T-cell leukemia/lymphoma. Blood,2014, 123(25): 3925-3931.
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