Basic Information
VIS ID
TVIS44011541
Fusion event
HTLV-1-FAM135B integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2014
PubMed ID
24735963
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr8
Cytoband
q24.23
Reference genome
GRCh37/hg19
Start
139250875/138238632 (Hg38)
End
139250875/138238632 (Hg38)
Orient
+
Location type
Intronic
Target gene
FAM135B
miRNAs that regulate target gene
hsa-mir-6823-3p ; hsa-mir-2114-3p ; hsa-mir-615-3p ; hsa-mir-361-3p
Nearest miRNA
hsa-mir-1204/Upstream/3433687; hsa-mir-10400/Downstream/2493932;
Nearest TSS
ENST00000518652/Upstream/86228; ENST00000518354/Downstream/186883;
Nearest CpG islands
None/Target, chr8-CpG: 109/Upstream/2780533, chr8-CpG: 119/Downstream/257920
Upstream sequence
AGACATGGCCTGTCTCAGCAACCCTTACCTCCCTGTGATTTTTTACGCCAATCAGCTCGTATTGCTATGAAAGTCCAGTTTTGCAAATGTCTCTGCAAGG
Downstream sequence
AAAGGCTTATTTTGAAGGGAACACCTGTTCTCTAATCCTTCCAGCTGATGCTACAATCTGTGCGGATTCCAATGTTATTTGTTAATGCGCTGGGCTTCTC
Reference
Cook, L. B., et al. The role of HTLV-1 clonality, proviral structure, and genomic integration site in adult T-cell leukemia/lymphoma. Blood,2014, 123(25): 3925-3931.
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