Basic Information
VIS ID
TVIS44011585
Fusion event
HTLV-1-chrX integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2014
PubMed ID
24735963
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chrX
Cytoband
p21.1
Reference genome
GRCh37/hg19
Start
36916909/36898836 (Hg38)
End
36916909/36898836 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-23c/Upstream/4257277; hsa-let-7f-2/Downstream/1125059;
Nearest TSS
ENST00000429181/Upstream/458544; ENST00000358047/Downstream/109561;
Nearest CpG islands
None/Target, chrX-CpG: 62/Upstream/1272636, chrX-CpG: 90/Downstream/58596
Nearby gene
FAM47C(+109523) ;
Upstream sequence
ctgagtgggtgtagcatagtgtatatccacaggcttcacaaacagggttgactgtgatcctaggaagactctacattggctatctctttccctggtaatc
Downstream sequence
actattaaattcctggctgttctgttgttttgcttatatcagaaataccacctatagttcaccaaggtcttcactgttttcaacaacacacttaggcatg
Reference
Cook, L. B., et al. The role of HTLV-1 clonality, proviral structure, and genomic integration site in adult T-cell leukemia/lymphoma. Blood,2014, 123(25): 3925-3931.
Curate