Basic Information
VIS ID
TVIS44011611
Fusion event
HTLV-1-chrX integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2014
PubMed ID
24735963
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chrX
Cytoband
q25
Reference genome
GRCh37/hg19
Start
123355637/124221787 (Hg38)
End
123355637/124221787 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-let-7f-2/Upstream/2850734; hsa-mir-105-1/Downstream/9947591;
Nearest TSS
ENST00000429181/Upstream/127874; ENST00000635518/Downstream/6081;
Nearest CpG islands
None/Target, chrX-CpG: 62/Upstream/261055, chrX-CpG: 42/Downstream/111048
Nearby gene
STAG2(+119132) ;
Upstream sequence
tactatcaccacaatcaaggtaataaacatatccatcaccaccaaaaattttcttgcatttcccccctttttttgtagtaagaatgcttaacatgagatc
Downstream sequence
taccatcttgagtttttaagtgcacaatactgtcttgtaaactataagcactatgttgtacagcagatctctagaacttattcatccttgctgccgattt
Reference
Cook, L. B., et al. The role of HTLV-1 clonality, proviral structure, and genomic integration site in adult T-cell leukemia/lymphoma. Blood,2014, 123(25): 3925-3931.
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