Basic Information
VIS ID
TVIS44011625
Fusion event
HTLV-1-chr4 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2014
PubMed ID
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr4
Cytoband
q13.1
Reference genome
End
66005297/65139579 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-12113/Upstream/4216895; hsa-mir-1243/Downstream/1137245;
Nearby gene
LINC02232(-135079) ;
Upstream sequence
tcaatgtattagtcatgtgtttgtggtgatgctgatgtaaacaaaccaattgcacaaccagtcttataaaaatagagcatatataattatttccagtacc
Downstream sequence
tacctgataataaccatttactggtttatataattactatacttcttatccttatcttagagtgtactttttctacttatgaaatataagttaactgtaa
Reference
Cook, L. B., et al. The role of HTLV-1 clonality, proviral structure, and genomic integration site in adult T-cell leukemia/lymphoma. Blood,2014, 123(25): 3925-3931.
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