Basic Information
VIS ID
TVIS44011705
Fusion event
HTLV-1-LOC107984842 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2014
PubMed ID
24735963
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr16
Cytoband
q24.3
Reference genome
GRCh37/hg19
Start
88856159/88789751 (Hg38)
End
88856159/88789751 (Hg38)
Orient
-
Location type
Intronic
Target gene
LOC107984842
Nearest miRNA
hsa-mir-11401/Upstream/73414;
Nearest TSS
ENST00000527434/Upstream/4531; ENST00000562747/Downstream/13462;
Nearest CpG islands
None/Target, chr16-CpG: 29/Upstream/3885, chr16-CpG: 113/Downstream/13621
Nearby gene
PIEZO1(-4531) ;
Upstream sequence
gatggggtcttgctatattgcccacgctggtctcaaactcccaggctcaagcgatcctcctgccttggcctcccaaggtgctgggatcacaggtgtgagc
Downstream sequence
caccgcgccagcacggggctgggggacgtggagggaagggagccaggcacagaaggaagacaccatgtggctctgtgtacgtgaaatgtctatggagaca
Reference
Cook, L. B., et al. The role of HTLV-1 clonality, proviral structure, and genomic integration site in adult T-cell leukemia/lymphoma. Blood,2014, 123(25): 3925-3931.
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