VISDB Viral Integration Site DataBase

VIS ID

TVIS44011719

Fusion event

HTLV-1-ISY1 integration

Validated

No

Detection method

HTS

Data source

download(RID)

Sample type

Disease

Adult T-cell leukemia (ATL)

Quality evaluation

Normal

Reported year

2014

PubMed ID

Virus name

HTLV-1

Reference genome

Not given

Chromosome

chr3

Cytoband

q21.3

Reference genome

Start

End

128859780/129140937 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-421 ; hsa-mir-6855-5p ; hsa-mir-3170 ; hsa-mir-6807-5p ; hsa-mir-7151-3p ; hsa-mir-5095 ; hsa-mir-193b-5p ; hsa-mir-5589-5p ; hsa-mir-6720-3p ; hsa-mir-4731-5p ; hsa-mir-668-5p ; hsa-mir-4252 ; hsa-mir-7155-5p ; hsa-mir-1273g-3p ; hsa-mir-4438 ; hsa-mir-519c-3p ; hsa-mir-129-5p ; hsa-mir-6513-5p ; hsa-mir-887-5p ; hsa-mir-3913-5p ; hsa-mir-3122 ; hsa-mir-450a-1-3p ; hsa-mir-4298 ; hsa-mir-1302 ; hsa-mir-4797-5p ; hsa-mir-106a-5p ; hsa-mir-106b-5p ; hsa-mir-1266-5p ; hsa-mir-150-5p ; hsa-mir-17-5p ; hsa-mir-186-3p ; hsa-mir-20a-5p ; hsa-mir-20b-5p ; hsa-mir-211-3p ; hsa-mir-302a-3p ; hsa-mir-302b-3p ; hsa-mir-302c-3p ; hsa-mir-302d-3p ; hsa-mir-302e ; hsa-mir-3187-3p ; hsa-mir-3194-5p ; hsa-mir-372-3p ; hsa-mir-373-3p ; hsa-mir-4270 ; hsa-mir-4435 ; hsa-mir-4441 ; hsa-mir-4518 ; hsa-mir-4687-5p ; hsa-mir-4690-3p ; hsa-mir-4701-5p ; hsa-mir-512-3p ; hsa-mir-519d-3p ; hsa-mir-520a-3p ; hsa-mir-520b ; hsa-mir-520c-3p ; hsa-mir-520d-3p ; hsa-mir-520e ; hsa-mir-520g-3p ; hsa-mir-520h ; hsa-mir-526b-3p ; hsa-mir-548s ; hsa-mir-5685 ; hsa-mir-588 ; hsa-mir-671-5p ; hsa-mir-6754-5p ; hsa-mir-93-5p ; hsa-mir-9500 ; hsa-mir-1304-3p ; hsa-mir-3940-5p ; hsa-mir-4507 ; hsa-mir-4536-3p ; hsa-mir-4639-3p ; hsa-mir-5007-5p ; hsa-mir-6793-5p ; hsa-mir-6794-3p ; hsa-mir-6821-5p

Nearest miRNA

hsa-let-7g/Upstream/294029; hsa-mir-1224/Downstream/131209;

Nearest TSS

Nearest CpG islands

None/Target, chr3-CpG: 148/Upstream/18413, chr3-CpG: 22/Downstream/20043

Upstream sequence

ggattacaggcgtgagccactgcgcctggcAGATCTGatctttaaacccactatttccatgtttgcaaatatattttaagataatagctggatgcagtgg

Downstream sequence

ctcacacctgtaatcctagcactttgggaggccaaggtaggcgatcacttcagcttaggagttcaagaccagcctgggcaacatggcaaaaccctgtctc