VISDB Viral Integration Site DataBase

VIS ID

TVIS44011720

Fusion event

HTLV-1-ATP1B3 integration

Validated

No

Detection method

HTS

Data source

download(RID)

Sample type

Disease

Adult T-cell leukemia (ATL)

Quality evaluation

Normal

Reported year

2014

PubMed ID

Virus name

HTLV-1

Reference genome

Not given

Chromosome

chr3

Cytoband

q23

Reference genome

Start

End

141604222/141885380 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-7-5p ; hsa-mir-760 ; hsa-mir-186-5p ; hsa-mir-100-5p ; hsa-mir-1272 ; hsa-mir-1322 ; hsa-mir-6079 ; hsa-mir-6828-5p ; hsa-mir-6807-5p ; hsa-mir-7151-3p ; hsa-mir-5095 ; hsa-mir-365b-5p ; hsa-mir-365a-5p ; hsa-mir-8052 ; hsa-mir-3199 ; hsa-mir-5589-5p ; hsa-mir-4731-5p ; hsa-mir-6778-3p ; hsa-mir-4707-3p ; hsa-mir-150-5p ; hsa-mir-7107-5p ; hsa-mir-1234-3p ; hsa-mir-186-3p ; hsa-mir-520h ; hsa-mir-520g-3p ; hsa-mir-512-3p ; hsa-mir-4438 ; hsa-mir-520e ; hsa-mir-520d-3p ; hsa-mir-520c-3p ; hsa-mir-520b ; hsa-mir-520a-3p ; hsa-mir-373-3p ; hsa-mir-372-3p ; hsa-mir-302e ; hsa-mir-302d-3p ; hsa-mir-302c-3p ; hsa-mir-302b-3p ; hsa-mir-302a-3p ; hsa-mir-93-5p ; hsa-mir-526b-3p ; hsa-mir-519d-3p ; hsa-mir-20b-5p ; hsa-mir-20a-5p ; hsa-mir-17-5p ; hsa-mir-106b-5p ; hsa-mir-106a-5p ; hsa-mir-4688 ; hsa-mir-629-3p ; hsa-mir-6848-3p ; hsa-mir-6843-3p ; hsa-mir-1299 ; hsa-mir-519e-5p ; hsa-mir-515-5p ; hsa-mir-6516-3p ; hsa-mir-3682-5p ; hsa-mir-323a-5p ; hsa-mir-548au-3p ; hsa-mir-196a-3p ; hsa-mir-671-5p ; hsa-mir-2467-3p ; hsa-mir-3171 ; hsa-mir-6128 ; hsa-mir-875-3p ; hsa-mir-5695 ; hsa-mir-519d-5p ; hsa-mir-935 ; hsa-mir-4692 ; hsa-mir-4514 ; hsa-mir-922 ; hsa-mir-4257 ; hsa-mir-6847-5p ; hsa-mir-1228-3p ; hsa-mir-4761-5p ; hsa-mir-411-3p ; hsa-mir-379-3p ; hsa-mir-7843-5p ; hsa-mir-6879-5p ; hsa-mir-6735-5p ; hsa-mir-4632-5p ; hsa-mir-4436b-3p ; hsa-mir-4724-5p ; hsa-mir-6757-3p ; hsa-mir-362-3p ; hsa-mir-329-3p ; hsa-mir-5571-5p ; hsa-mir-513b-3p ; hsa-mir-1273d ; hsa-mir-1197

Nearest miRNA

hsa-let-7g/Upstream/7447474; hsa-mir-1224/Downstream/9680496;

Nearest TSS

Nearest CpG islands

None/Target, chr3-CpG: 148/Upstream/7934, chr3-CpG: 80/Downstream/263740

Upstream sequence

CTCTTTATCCCCATCAAGACACACGTTCAGAGGACATCTGAGATGCTCATTTTTCCTAGCTTCATAATCCTAGCCACCCGTACCAAATTTCATTAACACT

Downstream sequence

CCCACCAACCTTGTCCTCATTTTATCAGGATCTGGTAGTGCCttttcttttttcttttcttttctttttttctttttttgtttttcagatggagtttcgc