Basic Information
VIS ID
TVIS44011730
Fusion event
HTLV-1-chrX integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2014
PubMed ID
24735963
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chrX
Cytoband
q21.2
Reference genome
GRCh37/hg19
Start
84908211/85653206 (Hg38)
End
84908211/85653206 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-let-7f-2/Upstream/1427378; hsa-mir-105-1/Downstream/182574;
Nearest TSS
ENST00000429181/Upstream/273463; ENST00000506327/Downstream/328603;
Nearest CpG islands
None/Target, chrX-CpG: 62/Upstream/408328, chrX-CpG: 66/Downstream/494733
Nearby gene
MIR1321(+182574) ;
Upstream sequence
atctctttgagatagtgatttttatttcttttcaatatgtaaccagaagtgggattgctgtatcatataatagttcatttttaattttttgagaagcccc
Downstream sequence
catactgtttccataatggctgtaccaattcacattcccaccagcaatgcataagagttcatttttctccacatcctcaccaatacttgttatctttttg
Reference
Cook, L. B., et al. The role of HTLV-1 clonality, proviral structure, and genomic integration site in adult T-cell leukemia/lymphoma. Blood,2014, 123(25): 3925-3931.
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