Basic Information
VIS ID
TVIS44011733
Fusion event
HTLV-1-C12orf42 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2014
PubMed ID
24735963
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr12
Cytoband
q23.3
Reference genome
GRCh37/hg19
Start
103906463/103512685 (Hg38)
End
103906463/103512685 (Hg38)
Orient
-
Location type
Intronic
Target gene
C12orf42
Nearest miRNA
hsa-let-7i/Upstream/3322736; hsa-mir-1178/Downstream/417740;
Nearest TSS
ENST00000382841/Upstream/16675; ENST00000551174/Downstream/35109;
Nearest CpG islands
None/Target, chr12-CpG: 104/Upstream/16620, chr12-CpG: 87/Downstream/327810
Nearby gene
C12orf42(No orient, 16675)
Upstream sequence
gcagaaattgtatatcaatTTTTTCTCAAGAAAAAGAACATGACCCATATGGTGTGCCCTTCAATGAGACTTTGAGAACTCGTAAGGATTGCTGTTGTGG
Downstream sequence
TGGTTAGGGGAGAAGTTGATCCTTAAGAAGAGAGTAggctggctgcagtggctcatgcctgtaatcccagcactttgggaagccaaggcgggtggatcac
Reference
Cook, L. B., et al. The role of HTLV-1 clonality, proviral structure, and genomic integration site in adult T-cell leukemia/lymphoma. Blood,2014, 123(25): 3925-3931.
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