Basic Information
VIS ID
TVIS44011801
Fusion event
HTLV-1-chr11 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2014
PubMed ID
24735963
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr11
Cytoband
q14.1
Reference genome
GRCh37/hg19
Start
81232662/81521620 (Hg38)
End
81232662/81521620 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-10392/Upstream/2099394; hsa-let-7a-2/Downstream/369121;
Nearest TSS
ENST00000527297/Upstream/758794; ENST00000526154/Downstream/449374;
Nearest CpG islands
None/Target, chr11-CpG: 30/Upstream/2080460, chr11-CpG: 25/Downstream/1167923
Nearby gene
MIR4300HG(No orient, 358231)
Upstream sequence
ATCATAGAGAACTTTATATGCTATAGAGATCCCTAATTATCATAGAGTATGACCACTAACTCCTAGAGATGTGCCAGCTAGACAAAATACAAAATAAAAA
Downstream sequence
ATCTAATTTTCTCTCATTTTCTATCGAAGTTTTATGGAAAGATTAAGTGAGAAATTACATATTATTTCCATCGTCTACACAAACTCAATTAATTTTGATA
Reference
Cook, L. B., et al. The role of HTLV-1 clonality, proviral structure, and genomic integration site in adult T-cell leukemia/lymphoma. Blood,2014, 123(25): 3925-3931.
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