Basic Information
VIS ID
TVIS44011813
Fusion event
HTLV-1-chr13 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2014
PubMed ID
24735963
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr13
Cytoband
q14.3
Reference genome
GRCh37/hg19
Start
54659355/54085220 (Hg38)
End
54659355/54085220 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-15a/Upstream/1275080; hsa-mir-1267/Downstream/226752;
Nearest TSS
ENST00000623511/Upstream/269801; ENST00000616396/Downstream/42123;
Nearest CpG islands
None/Target, chr13-CpG: 551/Upstream/883010, chr13-CpG: 25/Downstream/3055617
Nearby gene
LINC00458(-39104) ;
Upstream sequence
CGTACTAGAATCTCAATCTACAATGGTGGCCAAAGTCTCTTCACTCAGGAGGAATATAGATGAGCGGTTTATTATGATGAAAAATAATTTATTTTAAACA
Downstream sequence
GTTGGCACAAAGTAAATGTTCTGAAAGTATCAATAACTTCTGTTTCCTCTAGAATCTGTTTTCTGATCTTTGGCTAATATCTCATATTTCAGTGGGCACT
Reference
Cook, L. B., et al. The role of HTLV-1 clonality, proviral structure, and genomic integration site in adult T-cell leukemia/lymphoma. Blood,2014, 123(25): 3925-3931.
Curate