Basic Information
VIS ID
TVIS44011847
Fusion event
HTLV-1-RANBP3 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2014
PubMed ID
24735963
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr19
Cytoband
p13.3
Reference genome
GRCh37/hg19
Start
5969456/5969445 (Hg38)
End
5969456/5969445 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
FRA19B
Target gene
RANBP3
miRNAs that regulate target gene
hsa-mir-192-5p ; hsa-mir-455-3p ; hsa-mir-218-5p
Nearest miRNA
hsa-mir-1227/Upstream/1036705; hsa-let-7e/Downstream/420193;
Nearest TSS
ENST00000633603/Upstream/34983; ENST00000587836/Downstream/8634;
Nearest CpG islands
None/Target, chr19-CpG: 112/Upstream/54155, chr19-CpG: 145/Downstream/7984
Upstream sequence
CTCACGCTCTGCTCTCACAGATGCAACGCAGGAATTAATTCTGGGTAAATAAGTTCCCAAAATTCTCTGTGGCAAACCTGGGGGAGTTTAATTTAGCAAA
Downstream sequence
GGCATTTTAAACTTACTGCAAAAGGCAAGGCCTGCCTTCTAAACATGTGTATGGAGTAACTACTACTGTCTCTAGAATTTCCTCCCTTTCTTTGAACACC
Reference
Cook, L. B., et al. The role of HTLV-1 clonality, proviral structure, and genomic integration site in adult T-cell leukemia/lymphoma. Blood,2014, 123(25): 3925-3931.
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