Basic Information
VIS ID
TVIS44011867
Fusion event
HTLV-1-PHACTR3 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2014
PubMed ID
24735963
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr20
Cytoband
q13.32
Reference genome
GRCh37/hg19
Start
58267503/59692448 (Hg38)
End
58267503/59692448 (Hg38)
Orient
+
Location type
Intronic
Target gene
PHACTR3
miRNAs that regulate target gene
hsa-mir-3181
Nearest miRNA
hsa-mir-103a-2/Upstream/874135; hsa-mir-1-1/Downstream/616026;
Nearest TSS
ENST00000382410/Upstream/15787; ENST00000395636/Downstream/28762;
Nearest CpG islands
None/Target, chr20-CpG: 39/Upstream/86716, chr20-CpG: 184/Downstream/240252
Upstream sequence
GTACTCACTTTGAGTAACCATCAACTTATAAATAGCCTCAGGCCAATTGCCCAGTGATGATTTTGACTGTCGCTTGCCAGGGGCCTGGGCTTGTGGTTTG
Downstream sequence
GTTGTGAGTCTGTCATGGTCTCTGTGACCTCAGAGGAGGAGGAAGGAAGATGATGATGGATGCTTCTAGTGATGCAAGCaacaaacatttttggacaatg
Reference
Cook, L. B., et al. The role of HTLV-1 clonality, proviral structure, and genomic integration site in adult T-cell leukemia/lymphoma. Blood,2014, 123(25): 3925-3931.
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