Basic Information
VIS ID
TVIS44011906
Fusion event
HTLV-1-chr5 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2014
PubMed ID
24735963
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr5
Cytoband
p13.3
Reference genome
GRCh37/hg19
Start
33474969/33474864 (Hg38)
End
33474969/33474864 (Hg38)
Orient
-
Location type
Intergenic
Fragile sites / regions
FRA5A
Nearest miRNA
hsa-mir-10397/Upstream/1080389; hsa-mir-103a-1/Downstream/2673028;
Nearest TSS
ENST00000502646/Upstream/8106; ENST00000330120/Downstream/47366;
Nearest CpG islands
None/Target, chr5-CpG: 87/Upstream/33605, chr5-CpG: 25/Downstream/27085
Nearby gene
TARS(+6773) ;
Upstream sequence
gcagcaggaagaagaaaaatgagcaaaagatggaaaagcctcttataaaaccattagatcttgtgaaaactcactcactatcatgagaacagcataaagg
Downstream sequence
taaccacccccatgattcaattacctcccacagggttcctcccatgatgtggggattataggagctacaattcaagatgaaatttgggtggggacacagc
Reference
Cook, L. B., et al. The role of HTLV-1 clonality, proviral structure, and genomic integration site in adult T-cell leukemia/lymphoma. Blood,2014, 123(25): 3925-3931.
Curate