Basic Information
VIS ID
TVIS44011931
Fusion event
HTLV-1-LOC105379379 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2014
PubMed ID
24735963
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr8
Cytoband
p11.23
Reference genome
GRCh37/hg19
Start
37420738/37563220 (Hg38)
End
37420738/37563220 (Hg38)
Orient
-
Location type
Intronic
Target gene
LOC105379379
Nearest miRNA
hsa-mir-124-1/Upstream/7605872; hsa-mir-10400/Downstream/3707828;
Nearest TSS
ENST00000518652/Upstream/2854; ENST00000331569/Downstream/35558;
Nearest CpG islands
None/Target, chr8-CpG: 109/Upstream/2326627, chr8-CpG: 351/Downstream/131206
Nearby gene
LINC01605(No orient, 41834)
Upstream sequence
GCAAAAAGGACTCAAATAGactcaatccacaaacgttctgtggaatacccactcagggctagaatattgagggatttggtgcaaggaaaagataccctcc
Downstream sequence
ctgctcttaaggagtttacagtccagatgaggagacaaagcagagaaccctatatcattacaactgctaagaaccttggagatcagccatctaaaccccg
Reference
Cook, L. B., et al. The role of HTLV-1 clonality, proviral structure, and genomic integration site in adult T-cell leukemia/lymphoma. Blood,2014, 123(25): 3925-3931.
Curate