Basic Information
VIS ID
TVIS44011949
Fusion event
HTLV-1-chr4 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2014
PubMed ID
24735963
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr4
Cytoband
q32.1
Reference genome
GRCh37/hg19
Start
160996584/160075432 (Hg38)
End
160996584/160075432 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-12113/Upstream/946538; hsa-mir-1305/Downstream/3018142;
Nearest TSS
ENST00000502981/Upstream/297648; ENST00000512652/Downstream/463822;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/971449, chr4-CpG: 71/Downstream/3090877
Nearby gene
RAPGEF2(+715283) ;
Upstream sequence
aatgcaaactagtgtaaccactgtggaaaacagtgtgcagactccttaaagaactaaaagtagaaccaccatttgatcaagcaatcccactactgggttt
Downstream sequence
ctacccagaggaaaataagtcacgagatgagattgtcttttctttttttttttttgagatacgagtttcactcttgttgcccgggctggagtgcaaaggc
Reference
Cook, L. B., et al. The role of HTLV-1 clonality, proviral structure, and genomic integration site in adult T-cell leukemia/lymphoma. Blood,2014, 123(25): 3925-3931.
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