Basic Information
VIS ID
TVIS44012057
Fusion event
HTLV-1-LOC107986194 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2014
PubMed ID
24735963
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr4
Cytoband
q31.21
Reference genome
GRCh37/hg19
Start
143955457/143034304 (Hg38)
End
143955457/143034304 (Hg38)
Orient
-
Location type
Intronic
Target gene
LOC107986194
Nearest miRNA
hsa-mir-12113/Upstream/17526997; hsa-mir-1305/Downstream/309156;
Nearest TSS
ENST00000502981/Upstream/186872; ENST00000510377/Downstream/150525;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/187044, chr4-CpG: 99/Downstream/150227
Nearby gene
USP38(+150613) ;
Upstream sequence
GGACCTGTAGAGGACCATGCAGTATCAAGCATGAGGCCAGATGACATAAGGCTAAATCATAGATATTAAAGTCCCTAAGACCTATAGTGAAGATAATAgt
Downstream sequence
cttagtctgtttttgtgttgctctaaagaaatatctgaggctgatatttcgtaatttataaggaaaagaaatttatttggctcatagttctgcagggctg
Reference
Cook, L. B., et al. The role of HTLV-1 clonality, proviral structure, and genomic integration site in adult T-cell leukemia/lymphoma. Blood,2014, 123(25): 3925-3931.
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