Proximate region of VIS (GRCh38)VISEnhancerEnhancer/PromoterPromoterGene46689125051442550099850360395040077503262850351575050600505296750406385042606504420950459235084955
Basic Information
VIS ID
TVIS44012081
Fusion event
HTLV-1-STK32B integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2014
PubMed ID
24735963
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr4
Cytoband
p16.2
Reference genome
GRCh37/hg19
Start
5086682/5084955 (Hg38)
End
5086682/5084955 (Hg38)
Orient
+
Location type
Intronic
Target gene
STK32B
Nearest miRNA
hsa-mir-4800/Upstream/2834799; hsa-mir-12113/Downstream/838320;
Nearest TSS
ENST00000502981/Upstream/33359; ENST00000513705/Downstream/54605;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/32798, chr4-CpG: 18/Downstream/483453
Upstream sequence
AATATAGAAGCTCCTTTGTAATGATAATCTGTAGGTTGAACAACAACTCCATGCCCCATTTTTCAATCAATATTTAATGTAGCAAGGGCCTCTGGCATGA
Downstream sequence
TTCATGACAGTAAAAGTGTCGAGAAAAGCACAAATCAGTTCCCCAGTTATTAACTGTGCTTTAACTcagcattttccagaatgtactctgagacacatta
Reference
Cook, L. B., et al. The role of HTLV-1 clonality, proviral structure, and genomic integration site in adult T-cell leukemia/lymphoma. Blood,2014, 123(25): 3925-3931.
Curate