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VISDB
Viral Integration Site DataBase
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TVIS44012099
Basic Information
VIS ID
TVIS44012099
Fusion event
HTLV-1-LOC105370738 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2014
PubMed ID
24735963
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr15
Cytoband
q12
Reference genome
GRCh37/hg19
Start
26118101/25872954 (Hg38)
End
26118101/25872954 (Hg38)
Orient
-
Location type
Intronic
Target gene
LOC105370738
Nearest miRNA
hsa-mir-1268a/Upstream/24129; hsa-mir-10393/Downstream/2553537;
Nearest TSS
ENST00000557528/Upstream/7659;
ENST00000557171/Downstream/29406;
Nearest CpG islands
None/Target,
chr15-CpG: 55/Upstream/9283
,
chr15-CpG: 26/Downstream/116496
Nearby gene
ATP10A
(-9752) ;
Upstream sequence
ttctcctatatccatttatgtatgtatgtttgtacgtatgtttctagaaacagagactcactgtgttgcccgtgctggtcttgaactcctgggctcaaga
Downstream sequence
gatcttcctgtctcaggctcctatagtgctgggattacaggcatgagccattgagcccagccaatatcccataatttaaatgatattatgtaaaattagc
Reference
Cook, L. B., et al. The role of HTLV-1 clonality, proviral structure, and genomic integration site in adult T-cell leukemia/lymphoma. Blood,2014, 123(25): 3925-3931.
Sample Information
×
Sample name
ATL186
Sample type
Nontumor
Gender
Female
CpG Island Information
×
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