Basic Information
VIS ID
TVIS44012161
Fusion event
HTLV-1-NFXL1 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2014
PubMed ID
24735963
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr4
Cytoband
p12
Reference genome
GRCh37/hg19
Start
47910203/47908186 (Hg38)
End
47910203/47908186 (Hg38)
Orient
+
Location type
Intronic
Target gene
NFXL1
miRNAs that regulate target gene
hsa-mir-500a-5p
Nearest miRNA
hsa-mir-12113/Upstream/255443; hsa-mir-1243/Downstream/4804496;
Nearest TSS
ENST00000502981/Upstream/29482; ENST00000500571/Downstream/5956;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/70257, chr4-CpG: 80/Downstream/5658
Upstream sequence
GTTGGGAAGGGAAAGGTGAAATACATCGATCCTTCTGTCTGAAGACTTGATTAACTCTCAgccaggcacagtggctcacgcctgccactttgggaagctg
Downstream sequence
aggtgggagaattctctgtagccaggaattcaagaccagccttgacaacacaggaaaacactgtctctacaaaaaaattctaaaaaaattaaccaggcat
Reference
Cook, L. B., et al. The role of HTLV-1 clonality, proviral structure, and genomic integration site in adult T-cell leukemia/lymphoma. Blood,2014, 123(25): 3925-3931.
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