Basic Information
VIS ID
TVIS44012180
Fusion event
HTLV-1-LINC00423 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2014
PubMed ID
24735963
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr13
Cytoband
q13.1
Reference genome
GRCh37/hg19
Start
33441126/32866988 (Hg38)
End
33441126/32866988 (Hg38)
Orient
+
Location type
ncRNA_intronic
Target gene
LINC00423
Nearest miRNA
hsa-mir-2276/Upstream/8704484; hsa-mir-1267/Downstream/6797046;
Nearest TSS
ENST00000623511/Upstream/84114; ENST00000487852/Downstream/44662;
Nearest CpG islands
None/Target, chr13-CpG: 551/Upstream/279290, chr13-CpG: 157/Downstream/148802
Upstream sequence
GTGATGGTTCTTTTGCTGCAGAGATCACAATTGAAGGCCCTCGTACCCTTCTCAAAGACTTTCAGCCTCTGGCTCTGCTGGACTTATGGTCGCAGCTTCA
Downstream sequence
CTAAGGCTAACAATCCAGCTGCCATCACTTTATTGACTCTTCTAGAATTCTCTCTCACTTGCCTTTGTACTTTCATACTCCTCCTCTGGGATTCCAGTTT
Reference
Cook, L. B., et al. The role of HTLV-1 clonality, proviral structure, and genomic integration site in adult T-cell leukemia/lymphoma. Blood,2014, 123(25): 3925-3931.
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