Basic Information
VIS ID
TVIS44012216
Fusion event
HTLV-1-LINC01324 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2014
PubMed ID
24735963
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr3
Cytoband
q26.1
Reference genome
GRCh37/hg19
Start
164533279/164815491 (Hg38)
End
164533279/164815491 (Hg38)
Orient
+
Location type
ncRNA_intronic
Target gene
LINC01324
Nearest miRNA
hsa-let-7g/Upstream/643935; hsa-mir-1224/Downstream/3736363;
Nearest TSS
ENST00000440867/Upstream/84455; ENST00000494915/Downstream/15989;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/810984, chr3-CpG: 23/Downstream/2564648
Upstream sequence
gttcacagttctggacctcaaggataccttcttctgtattcccctgcactctgactcccagtttctctttgcctttgaggatcccacagaacacatgtcc
Downstream sequence
caacttacatcaacagtcttgccccaagggtttagggatagccctcatctgtttggtcaggcactggcccaagatctaggccacttctcaagtccaggca
Reference
Cook, L. B., et al. The role of HTLV-1 clonality, proviral structure, and genomic integration site in adult T-cell leukemia/lymphoma. Blood,2014, 123(25): 3925-3931.
Curate