Basic Information
VIS ID
TVIS44012289
Fusion event
HTLV-1-LOC101927709 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2014
PubMed ID
24735963
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr2
Cytoband
q14.2
Reference genome
GRCh37/hg19
Start
119358764/118601188 (Hg38)
End
119358764/118601188 (Hg38)
Orient
-
Location type
ncRNA_intronic
Fragile sites / regions
FRA2S
Target gene
LOC101927709
Nearest miRNA
hsa-mir-1285-2/Upstream/4879820; hsa-mir-10b/Downstream/8822349;
Nearest TSS
ENST00000437798/Upstream/414802; ENST00000412481/Downstream/233421;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/376298, chr2-CpG: 29/Downstream/173301
Upstream sequence
ctctctcagttcacttctgtttaatagggtgagtttacacacatacagaactagtgggctatcttgaccgctaggtaataatatatctgcattcatcatc
Downstream sequence
aagaccaattttgccacatgggctgaaggcacagtctaccccatcaggcgcttgggaattctgacataaaagttcaaaagtacggttacagtttcctgct
Reference
Cook, L. B., et al. The role of HTLV-1 clonality, proviral structure, and genomic integration site in adult T-cell leukemia/lymphoma. Blood,2014, 123(25): 3925-3931.
Curate