Basic Information
VIS ID
TVIS44012299
Fusion event
HTLV-1-chr3 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2014
PubMed ID
24735963
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr3
Cytoband
p24.3
Reference genome
GRCh37/hg19
Start
23139824/23098333 (Hg38)
End
23139824/23098333 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-12127/Upstream/2960692; hsa-let-7g/Downstream/2566540;
Nearest TSS
ENST00000440867/Upstream/725012; ENST00000628311/Downstream/104200;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/725459, chr3-CpG: 106/Downstream/104226
Nearby gene
UBE2E2(+104960) ;
Upstream sequence
agtgtggcctcttgattaaattctggttaattacttctgaagggtatagtccaacaaccatatttcgcatatggattaaaatgaacacaaatgcaaatat
Downstream sequence
atatcacacaagctatactaaaagtttctctaaagaattataaacCAgccagacgcaggggctcatgcctgtaatcctagcactttgggaggctgaggca
Reference
Cook, L. B., et al. The role of HTLV-1 clonality, proviral structure, and genomic integration site in adult T-cell leukemia/lymphoma. Blood,2014, 123(25): 3925-3931.
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