Basic Information
VIS ID
TVIS44012330
Fusion event
HTLV-1-LINC01278 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2014
PubMed ID
24735963
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chrX
Cytoband
q11.1
Reference genome
GRCh37/hg19
Start
62727999/63508119 (Hg38)
End
62727999/63508119 (Hg38)
Orient
+
Location type
ncRNA_intronic
Target gene
LINC01278
Nearest miRNA
hsa-let-7f-2/Upstream/8056537; hsa-mir-105-1/Downstream/277883;
Nearest TSS
ENST00000429181/Upstream/156775; ENST00000617377/Downstream/135929;
Nearest CpG islands
None/Target, chrX-CpG: 62/Upstream/156572, chrX-CpG: 43/Downstream/246714
Upstream sequence
TCAGAGTAGAAGGAGCTAATGGAACAATTACAGAATGAGAATTAAACTACTGAGATTATAAAACTACGGATCTGACATATTTTTTCTAAACCAAGAATAG
Downstream sequence
GAAATGGCACTAATGATTTATTGCAAGCTTTGCTGGAccacttatggtcccaatcttccattaacattaagatatattcaactactggctgggcgcagtg
Reference
Cook, L. B., et al. The role of HTLV-1 clonality, proviral structure, and genomic integration site in adult T-cell leukemia/lymphoma. Blood,2014, 123(25): 3925-3931.
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