Basic Information
VIS ID
TVIS44012332
Fusion event
HTLV-1-LOC107987346 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2014
PubMed ID
24735963
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chrY
Cytoband
q11.223
Reference genome
GRCh37/hg19
Start
23399263/21237377 (Hg38)
End
23399263/21237377 (Hg38)
Orient
+
Location type
Intronic
Target gene
LOC107987346
Nearest miRNA
hsa-mir-12120/Upstream/7758111;
Nearest TSS
ENST00000430575/Upstream/192653; ENST00000383020/Downstream/148983;
Nearest CpG islands
None/Target, chrY-CpG: 62/Upstream/661211, chrY-CpG: 25/Downstream/167308
Nearby gene
PRORY(No orient, 145597)
Upstream sequence
ttcttaggtattttattctttttgtattgattgtgaatgggagtttattctggatttgtctatctgcttatctgttgtagttgtaaaggaatgcttgtac
Downstream sequence
tttttgaacatcacttttgtaccctgagactttactaaagttgtttatcagtttaaggagttattgggctgatcatgtcacctgcaaacacagaaaattt
Reference
Cook, L. B., et al. The role of HTLV-1 clonality, proviral structure, and genomic integration site in adult T-cell leukemia/lymphoma. Blood,2014, 123(25): 3925-3931.
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