Basic Information
VIS ID
TVIS44012363
Fusion event
HTLV-1-ADTRP integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2014
PubMed ID
24735963
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr6
Cytoband
p24.1
Reference genome
GRCh37/hg19
Start
11714427/11714194 (Hg38)
End
11714427/11714194 (Hg38)
Orient
-
Location type
UTR3
Target gene
ADTRP
Nearest miRNA
hsa-mir-3691/Upstream/1274400; hsa-mir-10398/Downstream/4427362;
Nearest TSS
ENST00000381078/Upstream/106642; ENST00000412132/Downstream/14363;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/175498, chr6-CpG: 37/Downstream/294906
Upstream sequence
ggtcctcagcatccttctctgtaaactgaagagtttaaatgactctaagttcctctctctctctctagatgttctctaaCACCAAGTTTATGTGAGTTTC
Downstream sequence
TTTGGCCAGATTTTAACCAGAGACCATCCTCCACGAAGGTCAAAGATAATTAATTCTGAGATAGCAGGAGTTGTTTTTGGCATGTGCAGTCAACCTTTCA
Reference
Cook, L. B., et al. The role of HTLV-1 clonality, proviral structure, and genomic integration site in adult T-cell leukemia/lymphoma. Blood,2014, 123(25): 3925-3931.
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