Basic Information
VIS ID
TVIS44012375
Fusion event
HTLV-1-chr13 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2014
PubMed ID
24735963
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr13
Cytoband
q21.33
Reference genome
GRCh37/hg19
Start
68769821/68195689 (Hg38)
End
68769821/68195689 (Hg38)
Orient
-
Location type
Intergenic
Fragile sites / regions
FRA13B
Nearest miRNA
hsa-mir-1297/Upstream/1977365; hsa-mir-1267/Downstream/9502323;
Nearest TSS
ENST00000623511/Upstream/823302; ENST00000627910/Downstream/682691;
Nearest CpG islands
None/Target, chr13-CpG: 551/Upstream/964362, chr13-CpG: 34/Downstream/789083
Nearby gene
LINC00550(No orient, 665596)
Upstream sequence
atcaataagtaataggaatgttttggctccactataatcttataagaactttgtcatatatgctgtctgtcattgactgaaacatcattatataatgcat
Downstream sequence
gactgtataaacatacacacacacataaatacaaacgtatatataatatatatgcttttaataaatatacttttaatttaataaactttaataaGGATTC
Reference
Cook, L. B., et al. The role of HTLV-1 clonality, proviral structure, and genomic integration site in adult T-cell leukemia/lymphoma. Blood,2014, 123(25): 3925-3931.
Curate