Basic Information
VIS ID
TVIS44012392
Fusion event
HTLV-1-chrX integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2014
PubMed ID
24735963
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chrX
Cytoband
q26.3
Reference genome
GRCh37/hg19
Start
135226432/136144273 (Hg38)
End
135226432/136144273 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-let-7f-2/Upstream/1597562; hsa-mir-105-1/Downstream/406605;
Nearest TSS
ENST00000429181/Upstream/111239; ENST00000625935/Downstream/2429;
Nearest CpG islands
None/Target, chrX-CpG: 62/Upstream/45649, chrX-CpG: 98/Downstream/2515
Nearby gene
FHL1(+3127) ;
Nearest cancer related gene
FHL1(TSG, +3127) ;
Upstream sequence
TGGATTCCATTGACAAAGTCAGATGAAGGTCTTAGCACCACTTTGGGGGAAAAATAACTAACCTGAAAGAAGCAGCCACTTTGGATGACTGTAATAAAAG
Downstream sequence
TGATGAACAGTCTTTTTTCATTGTTTTGGAagtggagtatacaggtttggattgtgggctctggaaatatgctgcttggttttaaatcctggttccaagg
Reference
Cook, L. B., et al. The role of HTLV-1 clonality, proviral structure, and genomic integration site in adult T-cell leukemia/lymphoma. Blood,2014, 123(25): 3925-3931.
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